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Publications:
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All Peer-Reviewed Publications ORCID ID: 0000-0001-7292-8084 
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PublicationsRegenerationMurugan, N. J., Vigran, H. J., Miller, K., Golding, A., Pham, Q. L., Sperry, M., Rasmussen-Ivey, C., Kane, A. W., Kaplan, D. L., and Levin, M., (2022), Acute
multidrug delivery via a wearable bioreactor facilitates long-term limb regeneration and functional recovery in adult Xenopus laevis,
Science Advances, 8(4): abj2164 Minh-Thai, T. N., Samarasinghe, S., and Levin, M., (2021), A Comprehensive Conceptual and Computational Dynamics
Framework for Autonomous Regeneration Systems,
Artificial Life, 27: 80-104 Davidian, D., and Levin, M. (2021), Inducing Vertebrate Limb Regeneration: A Review of Past Advances and Future Outlook,
Cold Spring Harbor Perspectives in Biology, Sperry, M. M., Murugan, N. J., Levin, M., (2021), Studying Protista WBR and repair using Physarum polycephalum, Methods in Molecular Biology, in press Sousounis, K., Erdogan, B., Levin, M., and Whited, J., (2020), Precise control of
ion channel and gap junction expression is required for patterning of the regenerating axolotl limb,
International Journal of Developmental Biology, 64: 485-494 Bischof, J., Day, M., Miller, K., LaPalme, J., and Levin, M., (2020),
Nervous System and Tissue Polarity Dynamically Adapt to New Morphologies in Planaria,
Developmental Biology, 467 (1-2): 51-65 Leigh, N. D., Sessa, S., Dragalzew, A. C., Payzin‐Dogru, D., Sousa, J. F., Aggouras, A. N.,
Johnson, K., Dunlap, G. S., Haas, B. J., Levin, M., Schneider, I., Whited, J. L., (2020),
von Willebrand factor D and EGF domains is an evolutionarily conserved and required
feature of blastemas capable of multitissue appendage regeneration, Evolution & Development, 22: 297-311 Sousounis, K., Bryant, D. M., Fernandez, J. M., Eddy, S. S., Tsai, S. L., Gundberg, G. C., Han, J., Courtemanche, K.,
Levin, M., and Whited, J. L., (2020), Eya2 promotes cell cycle progression by regulating DNA damage response
during vertebrate limb regeneration, eLIFE, 9:e51217 Fields, C., and Levin, M., (2020),
Does regeneration recapitulate phylogeny?, Communicative and Integrative Biology, 13(1): 27-38 Pietak, A., Bischof, J., LaPalme, J., Morokuma, J., and Levin, M., (2019), Neural control of body-plan axis in regenerating planaria,
PLOS Computational Biology, 15(4): e1006904 Herrera-Rincon, C., Golding, A. S., Moran, K. M., Harrison, C., Martyniuk, C. J., Guay, J. A., Zaltsman, J.,
Carabello, H., Kaplan, D. L., and Levin, M., (2018), Brief Local Application of Progesterone via a Wearable
Bioreactor Induces Long-Term Regenerative Response in Adult Xenopus Hindlimb, Cell Reports, 25(6): 1593-1609 Cairns, D. M., Giordano, J. E., Conte, S., Levin, M., and Kaplan, D. L., (2018),
Ivermectin promotes peripheral nerve regeneration during wound healing,
ACS Omega, 3(10): 12392-12402 Busse, S. M., McMillen, P. T., and Levin, M., (2018),
Cross-limb Communication During Xenopus Hind-limb Regenerative Response: Non-Local Bioelectric Injury Signals,
Development, 145(19). pii: dev164210 McLaughlin, K. A., and Levin, M., (2017), Bioelectric Signaling in Regeneration:
Mechanisms of Ionic Controls of Growth and Form, Developmental Biology, 433(2): 177–189 Bryant, D. M., Sousounis, K., Farkas, J. E., Bryant, S., Thao, N., Guzikowski, A. R., Monaghan, J. R.,
Levin, M., and Whited, J. L., (2017), Repeated removal of developing limb buds permanently
reduces appendage size in the highly-regenerative axolotl, Developmental Biology, 424(1): 1-9 Durant, F., Morokuma, J., Fields, C., Williams, K., Adams, D. S., and Levin, M., (2017),
Long-Term, Stochastic Editing of Regenerative Anatomy via Targeting Endogenous
Bioelectric Gradients, Biophysical Journal, 112(10): 2231-2243 Garcia-Quismondo, M., Levin, M., and Lobo, D., (2017), Modeling regenerative processes with
Membrane Computing, Information Sciences, 381: 229-249 Neuhof, M., Levin, M., and Rechavi, O., (2016), Vertically and horizontally-transmitted memories –
the fading boundaries between regeneration and inheritance in planaria, Biology Open, 5, 1177-1188 Ferreira, G. B. S., Smiley, M., Scheutz, M., and Levin, M., (2016), Dynamic structure discovery and
repair for 3D cell assemblages, Proceedings of the Artificial Life Conference 2016, p. 352-359 Serlin, Z., Rife, J., and Levin, M., (2016), A Level Set Approach to Simulating Xenopus laevis Tail Regeneration,
Proceedings of the Artificial Life Conference 2016, p. 528-535 Pietak, A., and Levin, M., (2016), Exploring Instructive Physiological Signaling with
the Bioelectric Tissue Simulation Engine (BETSE), Frontiers in
Bioengineering and Biotechnology, 4(55): Golding, A., Guay, J. A., Herrera-Rincon, C., Levin, M., and Kaplan, D. L., (2016),
A Tunable Silk Hydrogel Device for Studying Limb Regeneration in Adult Xenopus
laevis, PLoS One 11, e0155618 Sullivan, K. G., Emmons-Bell, M., and Levin, M., (2016), Physiological Inputs Regulate
Species-Specific Anatomy During Embryogenesis And Regeneration,
Communicative and Integrative Biology, 9:4, e1192733 Lobo, D., Morokuma, J., and Levin, M., (2016), Computational discovery and in vivo validation of
hnf4 as a regulatory gene in planarian re-generation,
Bioinformatics, doi: 10.1093/bioinformatics/btw299 De, Abhishek, Chakravarthy, V. Srinivasa , and Levin, M., (2016), A Computational Model of Planarian
Regeneration, International Journal of Parallel, Emergent, and Distributed Systems, 32(4): 331-347 Durant, F., Lobo, D., Hammelman, J., and Levin, M., (2016), Physiological controls of
large-scale patterning in planarian regeneration: a molecular and computational
perspective on growth and form, Regeneration, 3(2): 78-102 Lobo, D., and Levin, M., (2016), Computing a worm: reverse-engineering planarian regeneration, Advances in Unconventional Computing, Andrew Adamatzky ed., Springer, in press Hammelman, J., Lobo, D., and Levin, M., (2016),
Artificial neural networks as models
of robustness in development and regeneration: stability of memory during morphological
remodeling, in Artificial Neural Network (ANN) Modeling, S. Shanmuganathan and S. Samarasinghe (Eds.) , p. 45-65 Emmons-Bell, M., Durant, F., Hammelman, J., Bessonov, N., Volpert, V.,
Morokuma, J., Pinet, K., Adams, D. S., Pietak, A., Lobo, D., and Levin, M.,
(2015), Gap junctional blockade stochastically induces different
species-specific head anatomies in genetically wild-type Girardia
dorotocephala flatworms, International Journal of Molecular Sciences, 16: 27865–27896 Pezzulo, G., and Levin, M., (2015), Re-membering the body: applications of computational
neuroscience to the top-down control of regeneration of limbs and other complex organs,
Integrative Biology, 7: 1487-1517 Pai, V. P., Martyniuk, C. J., Echeverri, K., Sundelacruz, S., Kaplan, D. L.,
and Levin, M., (2015), Genome-wide analysis reveals conserved transcriptional
responses downstream of resting potential change in Xenopus embryos, axolotl
regeneration, and human mesenchymal cell differentiation, Regeneration, 3(1): 3-25 Bessonov, N., Levin, M., Morozova, N., Reinberg, N., Tosenberger, A., Volpert, V., (2015),
Target morphology and cell memory: a model of regenerative pattern formation,
Neural Regeneration Research, 10(12): 1901-1905 Blackiston, D. J., Shomrat, T., and Levin, M., (2015), The Stability of Memories
During Brain Remodeling: a Perspective, Communicative and Integrative Biology, 8(5): e1073424 Lobo, D., and Levin, M., (2015), Inferring regulatory networks from experimental morphological phenotypes:
a computational method reverse-engineers planarian regeneration, PLoS Computational Biology, 11(6): e1004295 A. Tosenberger, N. Bessonov, M. Levin, N. Reinberg, V.Volpert, N. Morozova, (2015),
A conceptual model of morphogenesis and regeneration, Acta Biotheoretica, 63: 283-294 Friston, K., Levin, M., Sengupta B., and Pezzulo, G., (2015), 'Knowing one's place' a free energy approach
to pattern regulation, Journal of the Royal Society Interface, 12: 20141383 Lobo, D., Feldman, E. B., Shah, M., Malone, T. J., and Levin,
M., (2014), Limbform: a functional ontology-based
database of limb regeneration experiments,
Bioinformatics, 30(24): 3598-3600 Lobo, D., Feldman, E. B., Shah, M., Malone, T., and Levin, M., (2014),
A bioinformatics expert system linking functional data to
anatomical outcomes in limb regeneration, Regeneration,
1(2): 37-56 Levin, M., (2014), Endogenous bioelectrical networks
store non-genetic patterning information during development and
regeneration, Journal of Physiology, 592(11): 2295–2305 Lobo, D., Solano, M., Bubenik, G. A., and Levin, M., (2014), A linear-encoding model
explains the variability of the target morphology in regeneration,
Journal of the Royal Society Interface, 11(92): 20130918 Lobo, D., Malone, T.J., and Levin, M., (2013),
Planform: an application and database of graph-encoded
planarian regenerative experiments, Bioinformatics,
29(8): 1098-1100 Adams, D. S., Tseng, A-S. and M. Levin, (2013), Light-activation of the Archaerhodopsin
H+ pump reverses age-dependent loss of vertebrate regeneration: sparking system-level
controls in vivo, Biology Open, 2(3): 306-313 Beane, W. S., Morokuma, J., Lemire, J. M., and Levin, M., (2013),
Bioelectric signaling regulates head and organ size during planarian regeneration,
Development, 140(2): 313-322 Tseng, A.-S., and Levin, M., (2012), Transducing bioelectrical signals into
epigenetic pathways during tadpole tail regeneration,
Anatomical Record, 295(10): 1541-1551 Levin, M., (2012), Morphogenetic fields in embryogenesis, regeneration, and cancer:
non-local control of complex patterning, BioSystems, 109(3): 243-261 Beane, W. S., Tseng, A.-S., Morokuma, J. M., Lemire, J. M., and
Levin, M., (2012), Inhibition of
planar cell polarity extends neural growth during regeneration, homeostasis,
and development, Stem Cells and Development, 21(12):
2085-2094 [cover] Lobo, D., Beane, W., and Levin, M., (2012), Modeling planarian
regeneration: a primer for reverse-engineering the worm,
PLoS Computational Biology, 8(4): e1002481 [cover] Beane, W. S., Morokuma, J., Adams, D. S., and Levin, M., (2011),
A chemical genetics approach reveals H,K-ATPase-mediated
membrane voltage is required for planarian head regeneration.
Chemistry & Biology, Tseng, A-S., Beane, W. S., Lemire, J. M., Masi, A., and M. Levin, (2010),
Induction of vertebrate regeneration by a
transient sodium current, Journal of Neuroscience,
30(39): 13192-13200 Hechavarria, D., Dewilde, A., Braunhut, S., Levin, M., and
Kaplan, D. K., (2010), BioDome regenerative sleeve for
biochemical and biophysical stimulation of tissue regeneration.
Medical Engineering and Physics, 32: 1065-1073 Levin, M. (2009), Bioelectric mechanisms in
regeneration: Unique aspects and future perspectives.
Seminars in Cell and Developmental Biology, 20: 543-556 Levin, M., (2009), Errors of Geometry: regeneration in a
broader perspective. Seminars in Cell and Developmental
Biology, 20(6): 643-645 Levin, M., (2009), Regeneration: recent advances, major
puzzles, and biomedical opportunities. Seminars in Cell
and Developmental Biology, 20(5): 515-516 Oviedo, N. J., B. J. Pearson, M. Levin, and A. S. Alvarado,
(2008), Planarian PTEN homologs regulate stem cells and
regeneration through TOR signaling, Disease Models and
Mechanisms, 1: 131-143 Oviedo, N., and Levin, M., (2008), Planarian regeneration model as a context for the study of drug effects and mechanisms, in Planaria: A Model for Drug Action and Abuse, R. B. Raffa & S.M. Rawls (Eds.), RG Landes Co.: Austin, p. 95-104 Oviedo, N., Nicolas, C. L., Adams, D. S., and Levin, M. (2008),
Planarians: a versatile and powerful model system for molecular
studies of regeneration, adult stem cell regulation, aging, and behavior,
in Emerging Model Organisms: A Laboratory Manual, Volume 1, Cold Spring Harbor Press: Cold Spring Harbor, NY Tseng, A-S., and Levin, M., (2008), Tail regeneration in
Xenopus laevis as a model for understanding tissue repair,
Journal of Dental Research, 87(9): 806-816 Tseng, A-S., Adams, D. S., Qiu, D., Koustubhan, P., and Levin, M. (2007),
Apoptosis is required during early stages of tail
regeneration in Xenopus laevis. Developmental Biology,
301: 62-69 Adams, D. S., Masi, A., and Levin, M. (2007), H+
Pump-dependent changes in membrane voltage are an early
mechanism necessary and sufficient to induce Xenopus tail regeneration.
Development, 134: 1323-1335 Oviedo, N. J., Levin, M., (2007), smedxin-11 is a
Planarian Stem Cell Gap Junction Gene Required for Regeneration
and Homeostasis. Development, 134(17): 3121-3131 Levin, M., (2007), Large-Scale Biophysics: Ion Flows and Regeneration. Trends in Cell Biology, 17(6): 261-270 PDF Ingber, D., and Levin, M. (2007), What lies at the
interface of regenerative medicine and developmental biology?.
Development, 134: 2541-2547
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