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Publications:
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All Peer-Reviewed Publications ORCID ID: 0000-0001-7292-8084 
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PublicationsPlanariaGrodstein, J., and Levin, M., (2022), A Computational Approach to Explaining Bioelectrically-induced Persistent, Stochastic Changes of Axial Polarity in Planarian Regeneration, Bioelectricity, in press Bischof, J., Day, M., Miller, K., LaPalme, J., and Levin, M., (2020),
Nervous System and Tissue Polarity Dynamically Adapt to New Morphologies in Planaria,
Developmental Biology, 467 (1-2): 51-65 Williams, K., Bischof, J., Lee, F., Miller, K., LaPalme, J., Wolfe, B., and Levin, M., (2020),
Regulation of axial and head patterning during planarian regeneration by a commensal bacterium,
Mechanisms of Development, 163:103614 Fields, C., and Levin, M., (2020),
Does regeneration recapitulate phylogeny?, Communicative and Integrative Biology, 13(1): 27-38 Cervera, J., Meseguer, S., Levin, M., and Mafe, S., (2020), Bioelectrical model of head-tail patterning
based on cell ion channels and intercellular gap junctions, Bioelectrochemistry, 132: 107410 Emmons-Bell, M., Durant, F., Tung, A., Pietak, A., Miller, K., Kane, A., Martyniuk, C. J.,
Davidian, D., Morokuma, J., and Levin, M., (2019),
Regenerative Adaptation To Electrochemical Perturbation In Planaria: A Molecular Analysis
Of Physiological Plasticity, iScience, 22: 147-165 Beane, W. S., Adams, D. S., Morokuma, J., and Levin, M., (2019), Live Imaging of Intracellular pH
in Planarians Using the Ratiometric Fluorescent Dye SNARF-5F-AM,
Biology Methods and Protocols, 4(1): bpz005 Pietak, A., Bischof, J., LaPalme, J., Morokuma, J., and Levin, M., (2019), Neural control of body-plan axis in regenerating planaria,
PLOS Computational Biology, 15(4): e1006904 Ferenc, N. N., and Levin, M., (2019), Effects of ivermectin exposure on regeneration of
D. dorotocephala planaria: exploiting human-approved ion channel drugs as morphoceuticals,
Macromolecular Bioscience, 19(3): 1800237 Levin, M., Pietak, A., and Bischof, J., (2019), Planarian Regeneration as a Model of Anatomical
Homeostasis: Recent Progress in Biophysical and Computational Approaches, Seminars in Cell and Developmental Biology, 87: 125-144 Durant, F., Bischof, J., Fields, C., Morokuma, J., LaPalme, J., Hoi, A., and Levin, M., (2019), The role of early bioelectric signals
in the regeneration of planarian anterior/posterior polarity, Biophysical Journal, 116: 948-961 Lee, F. J., Williams, K. B., Levin, M., and Wolfe, B. E., (2018), The bacterial metabolite indole
inhibits regeneration of the planarian flatwork Dugesia japonica, iScience, 10: 135-148 Ferreira, G.B.S., Scheutz, M., and Levin, M., (2018), Modeling Cell Migration in a Simulated
Bioelectrical Signaling Network for Anatomical Regeneration, in Takashi Ikegami, N.V., Olaf
Witkowski, Mizuki Oka, Reiji Suzuki and Hiroyuki Iizuka (Eds.), ALIFE 2018. MIT Press, Tokyo, pp. 194-201 Pietak, A., and Levin, M., (2018), Bioelectrical control of positional information in
development and regeneration: a review of conceptual and computational advances,
Progress in Biophysics and Molecular Biology, 137: 52-68 Fields, C., and Levin, M., (2018), Are planaria individuals? What regenerative
biology is telling us about the nature of multicellularity, Evolutionary Biology,
Durant, F., Morokuma, J., Fields, C., Williams, K., Adams, D. S., and Levin, M., (2017),
Long-Term, Stochastic Editing of Regenerative Anatomy via Targeting Endogenous
Bioelectric Gradients, Biophysical Journal, 112(10): 2231-2243 Morokuma, J., Durant, F. R., Williams, K. B., Finkelstein, J. M., Blackiston,
D. J., Clements, T., Reed, D. W., Roberts, M., Jain, M., Kimel, K., Trayger, S. A.,
Wolfe, B. E., and Levin, M., (2017), Planarian regeneration in space: persistent anatomical,
behavioral, and bacteriological changes induced by space travel, Regeneration, 4(2): 85-102 Neuhof, M., Levin, M., and Rechavi, O., (2016), Vertically and horizontally-transmitted memories –
the fading boundaries between regeneration and inheritance in planaria, Biology Open, 5, 1177-1188 Sullivan, K. G., Emmons-Bell, M., and Levin, M., (2016), Physiological Inputs Regulate
Species-Specific Anatomy During Embryogenesis And Regeneration,
Communicative and Integrative Biology, 9:4, e1192733 Lobo, D., Morokuma, J., and Levin, M., (2016), Computational discovery and in vivo validation of
hnf4 as a regulatory gene in planarian re-generation,
Bioinformatics, 32(17): 2681-2685 Durant, F., Lobo, D., Hammelman, J., and Levin, M., (2016), Physiological controls of
large-scale patterning in planarian regeneration: a molecular and computational
perspective on growth and form, Regeneration, 3(2): 78-102 Lobo, D., and Levin, M., (2016), Computing a worm: reverse-engineering planarian regeneration, Advances in Unconventional Computing, Andrew Adamatzky ed., Vol. 2, Springer, p. 637-654 Emmons-Bell, M., Durant, F., Hammelman, J., Bessonov, N., Volpert, V.,
Morokuma, J., Pinet, K., Adams, D. S., Pietak, A., Lobo, D., and Levin, M.,
(2015), Gap junctional blockade stochastically induces different
species-specific head anatomies in genetically wild-type Girardia
dorotocephala flatworms, International Journal of Molecular Sciences, 16: 27865–27896 Lobo, D., and Levin, M., (2015), Inferring regulatory networks from experimental morphological phenotypes:
a computational method reverse-engineers planarian regeneration, PLoS Computational Biology, 11(6): e1004295 Shomrat, T., and Levin, M., (2013), An
automated training paradigm reveals long-term memory in planaria and its persistence through head regeneration,
Journal of Experimental Biology, 216(20): 3799-3810 Beane, W. S., Morokuma, J., Lemire, J. M., and Levin, M., (2013),
Bioelectric signaling regulates head and organ size during planarian regeneration,
Development, 140(2): 313-322 Lobo, D., Malone, T. J., and Levin, M., (2013), Towards
a bioinformatics of patterning: a computational approach to
understanding regulative morphogenesis, Biology Open, 2(2): 156-169 Lobo, D., Beane, W., and Levin, M., (2012), Modeling planarian
regeneration: a primer for reverse-engineering the worm,
PLoS Computational Biology, 8(4): e1002481 [cover] Beane, W. S., Tseng, A.-S., Morokuma, J. M., Lemire, J. M., and
Levin, M., (2012), Inhibition of
planar cell polarity extends neural growth during regeneration, homeostasis,
and development, Stem Cells and Development, 21(12):
2085-2094 [cover] Beane, W. S., Morokuma, J., Adams, D. S., and Levin, M., (2011),
A chemical genetics approach reveals H,K-ATPase-mediated
membrane voltage is required for planarian head regeneration.
Chemistry & Biology, Blackiston, D., Shomrat, T., Nicolas, C. L., Granata, C., and Levin, M., (2010), A second-generation device for automated
training and quantitative behavior analyses of molecularly-tractable model organisms, PLoS One, 5(12): e14370 N. J. Oviedo, J. Morokuma, P. Walentek, I. P. Kema, M. B. Gu, J. M. Ahn, J.
S. Hwang, T. Gojobori, and M. Levin, (2010), Long-range Neural and
Gap Junction Protein-mediated Cues Control Polarity During Planarian
Regeneration, Developmental Biology, 339: 188-199 Oviedo, N. J., B. J. Pearson, M. Levin, and A. S. Alvarado, (2008),
Planarian PTEN homologs regulate stem cells and regeneration through TOR
signaling, Disease Models and Mechanisms, 1: 131-143 Oviedo, N. J., Nicolas, C. L., Adams, D. S., and Levin, M., (2008),
Live imaging of planarian membrane potential using DiBAC4(3).
Cold
Spring Harbor Protocols, doi:10.1101/pdb.prot5055 Oviedo, N. J., Nicolas, C. L., Adams, D. S., and Levin, M., (2008),
Gene knockdown in planarians using RNA interference. Cold Spring Harbor
Protocols, doi:10.1101/pdb.prot5054 Oviedo, N. J., Nicolas, C. L., Adams, D. S., and Levin, M., (2008),
Establishing and maintaining a colony of planarians. Cold Spring Harbor
Protocols, doi:10.1101/pdb.prot5053 Oviedo, N., and Levin, M., (2008), Planarian regeneration model as a context for the study of drug effects and mechanisms, in Planaria: A Model for Drug Action and Abuse, R. B. Raffa & S.M. Rawls (Eds.), RG Landes Co.: Austin, p. 95-104 Nicolas, C.L., Abramson, C.I., and Levin, M. (2008), Analysis of behavior in the planarian model, in Planaria: A Model for Drug Action and Abuse, Raffa RB & Rawls SM (eds), RG Landes Co.: Austin, pp. 83-94 Oviedo, N., Nicolas, C. L., Adams, D. S., and Levin, M. (2008),
Planarians: a versatile and powerful model system for molecular
studies of regeneration, adult stem cell regulation, aging, and behavior,
in Emerging Model Organisms: A Laboratory Manual, Volume 1, Cold Spring Harbor Press: Cold Spring Harbor, NY Hicks, C., Sorocco, D., and Levin, M., (2006), Automated Analysis of
Behavior: A Computer-Controlled System for Drug Screening and the Investigation
of Learning. Journal of Neurobiology, 66(9): 977-90 Nogi, T., Yuan, Y. E., Sorocco, D., Perez-Tomas, R., and Levin, M., (2005),
Eye regeneration assay reveals an invariant functional left-right
asymmetry in the early bilaterian, Dugesia japonica. Laterality, 10(3):
193-205 Nogi, T., and Levin, M., (2005), Characterization of innexin gene
expression and functional roles of gap-junctional communication in planarian
regeneration, Developmental Biology, 287(2): 314-335 |
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