for modeling how fragmented sequences can be resassembled using overlapping regions. (For more control over the model, use this version, which has options to change the read size and include index sequences.)
vcf to FASTA converter
for use in our online Mutations Investigation Experiment module.
Basic Local Alignment Search Tool (BLAST)
searches NCBI databases for nucleotide or protein sequences which match the search query.(For practice using BLAST use our activity.)
multiple sequence alignment (>2 samples) for protein, RNA, or DNA sequecnes. Used to generate a percent similarity matrix in our genetics of race module.
EMBOSS needle protein or nucleotide
pairwise alignment (2 samples) for protein and nucleotide sequences.
translates a given nucleotide for every reading frame and highlights potential proteins.
3D protein viewer. Use "File > Retrieve by ID" to bring up protein by protein database or pubchem identifiers.
collection of databases from the National Center for Biotechnology Information.
collection of metagenomic data from a variety of biomes.
RCSB Protein Data Bank
protein database which includes structure models.